Transcription Factors and Regulatory Networks

We intend to identify TF targets and gene promoters.

Souza, Glaucia Mendes; Souza, Glaucia Mendes Van Sluys, Marie-Anne Lembke, Carolina Gimiliani Lee, Hayan Margarido, Gabriel Rodrigues Alves Hotta, Carlos Takeshi Gaiarsa, Jonas Weissmann Diniz, Augusto Lima Oliveira, Mauro De Medeiros Ferreira, Sávio De Siqueira Nishiyama, Milton Yutaka Ten-Caten, Felipe Ragagnin, Geovani Tolfo Andrade, Pablo De Morais De Souza, Robson Francisco Nicastro, Gianlucca Gonçalves Pandya, Ravi Kim, Changsoo Guo, Hui Durham, Alan Mitchell Carneiro, Monalisa Sampaio Zhang, Jisen Zhang, Xingtan Zhang, Qing Ming, Ray , et al. ; Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop. GigaScience, v. 8, p. 129, 2019.

Ferreira, S. S., Hotta, C. T., Poelking, V. G. C., Leite, D. C. C., Buckeridge, M. S., Loureiro, M. E., Barbosa, M. H. P., Carneiro, M. S., Souza, G. M. (2016). Co-expression network analysis reveals transcription factors associated to cell wall biosynthesis in sugarcane. Plant Molecular Biology 1-21. 10.1007/s11103-016-0434-2.

Moraes, I., Yuan, Z. F., Liu, S., Souza, G. M., Garcia, B. A., Casas-Mollano, J. A. (2015). Analysis of Histones H3 and H4 Reveals Novel and Conserved Post-Translational Modifications in Sugarcane. PLOS ONE. DOI: 10.1371/journal.pone.0134586

Milton Yutaka Nishiyama-Jr, Fabio Vicente, Paloma Mieko Sato, Savio Siqueira Ferreira, Frank Alex Feltus and Glaucia M Souza. (2011). The Saccharinae transcriptome. In Plant Genetics and Genomics: Crops and Models, Vol. 11: Genetics and Genomics of the Saccharinae. Paterson, Andrew H. (Ed). Springer, New York. ISBN: 978-1-4419-5946-1.

Casu,  R. E., Hotta, C. T., Souza, G. M. (2010). Functional Genomics: Transcriptomics of Sugarcane – Current Status and Future Prospects. In: Sugarcane volume of “Genomics of Industrial Crop Plants”. Robert Henry (Org).

Gray, J., Bevan, M., Brutnell, T., Buell, R., Cone, K., Hake, S., Jackson, D., Kellogg, E., Lawrence, C., McCouch, S., Mockler, T., Moose, S., Paterson, A., Peterson, T., Rokshar, D., Souza, G. M., Springer, N., Stein, N., Timmermans, M., Wang, G.-L., Grotewold, E. (2009). Naming Transcription Factors. Plant Physiol. 149, 4-6.

Yilmaz, A., Nishiyama-Jr, M. Y., Garcia-Fuentes, B., Souza, G. M., Janies, D., Gray, J. and Grotewold, E. (2008). GRASSIUS: A Platform for Comparative Regulatory Genomics Across the Grasses. Plant Physiol. 149, 171–180.

D'Hont, A.; Souza, G.M.; Menossi, M.; Vincentz, M.; Van Sluys M-A ; Glaszmann JC ; Ulian, E. C. (2008). Sugarcane: a Major Source of Sweetness, Alcohol, and Bio-energy. In: Paul Moore; Ray Ming. (Org.). Genomics of Tropical Crop Plants.